By Gloria Coruzzi, Rodrigo Gutiérrez
Plant platforms Biology is a superb new addition to the more and more recognized and revered Annual Plant Reviews. cut up into components, this identify deals the reader:
A primary conceptual framework for structures Biology together with community TheoryContent:
Chapter 1 platforms Biology: ideas and purposes in Plant study (pages 1–40): Gloria M. Coruzzi, Alejandro R. Burga, Manpreet S. Katari and Rodrigo A. Gutierrez
Chapter 2 an summary of structures Biology (pages 41–66): Reka Albert and Sarah M. Assmann
Chapter three Prokaryotic structures Biology (pages 67–136): Thadeous Kacmarczyk, Peter Waltman and Richard Bonneau
Chapter four Animal platforms Biology: in the direction of a structures View of improvement in C. Elegans (pages 137–165): Anita Fernandez, Fabio Piano and Kristin C. Gunsalus
Chapter five software program instruments for structures Biology: Visualizing the results of N Experiments on M Entities (pages 167–195): Chris Poultney and Dennis Shasha
Chapter 6 The Plant Genome: deciphering the Transcriptional Hardwiring (pages 196–228): Erich Grotewold and Nathan Springer
Chapter 7 The RNA global: selecting miRNA?Target RNA Pairs as attainable lacking hyperlinks in Multi?Network versions (pages 229–242): Pamela J. eco-friendly and Blake C. Meyers
Chapter eight Proteomics: surroundings the degree for platforms Biology (pages 243–257): Scott C. Peck
Chapter nine Metabolomics: Integrating the Metabolome and the Proteome for platforms Biology (pages 258–289): Wolfram Weckwerth
Chapter 10 From the Ionome to the Genome: deciding on the Gene Networks that keep watch over the Mineral content material of vegetation (pages 290–303): Mary Lou Guerinot, Ivan Baxter and David E. Salt
Chapter eleven improvement and platforms Biology: using the Genomics Wave in the direction of a platforms realizing of Root improvement (pages 304–330): Siobhan M. Brady and Philip N. Benfey
Chapter 12 views on Ecological and Evolutionary platforms Biology (pages 331–349): Christina L. Richards, Yoshie Hanzawa, Manpreet S. Katari, Ian M. Ehrenreich, Kathleen E. Engelmann and Michael D. Purugganan
Read or Download Annual Plant Reviews Volume 35: Plant Systems Biology PDF
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Extra info for Annual Plant Reviews Volume 35: Plant Systems Biology
The Unmediated MultiDB Queries allow the databases to remain separate but the query itself extends across all of the databases. The Federated Database is a combination of Data Warehouse and Unmediated MultiDB Queries; it allows the databases to be separate but it contains a federated schema, which dynamically translates to queries in the individual schemas. For a detailed discussion about these methods see Peter Karp’s (1996) review. In addition to simply providing data, many websites also provide applications that analyze the data for the user.
Robustness can be achieved by multiple mechanisms (for a review see Kitano, 2004). First, negative or positive feedbacks allow for robust dynamic responses in regulatory contexts as diverse as the cell cycle, circadian clock and chemotaxis. Second, robustness can also be achieved by providing multiple means to achieve a specific function. These alternative or fail-safe mechanisms encompass the typically observed phenomena in living systems of redundancy, overlapping function and diversity. Third, the modularity of living systems is an effective mechanism of containing perturbations and damage locally to minimize the effect on the whole system.
The modules were defined as sets of co-expressed genes that share a common function. A number of these core modules were conserved throughout evolution. Examples of core modules identified were: rRNA processing machinery, heat shock response and the proteosome. More recently, it was reported that hub genes from co-expression networks in A. , 2006). For the positive coexpression network studied, 65% of the hub genes (having 20 or more connections) were found to be single-copy. On the other hand, only 37% of genes having fewer than 20 connections were single-copy genes.
Annual Plant Reviews Volume 35: Plant Systems Biology by Gloria Coruzzi, Rodrigo Gutiérrez